Analysis Portals
The “Analysis Portal” aims to provide the most appropriate analysis and visualization functionality for each data type. It can refer to multiple apps/platforms because no one platform supports all data types. The team at Memorial Sloan Kettering Cancer Center (MSK) develops, adapts, and maintains all the component apps/platforms for the Gray Foundation-generated data. Below, we describe the ones that will be available for the Gray Foundation consortium and their primary data targets.
cBioPortal
The cBioPortal for Cancer Genomics was originally developed at Memorial Sloan Kettering Cancer Center (MSK) for sharing of genomics data. For the Gray Foundation-specific instance, the genomics data that will be available are:
- Copy Number Variation (CNV) data
- Gene Expression (RNA-seq)
- Mutations
CELLxGENE
CELLxGENE ("cell-by-gene") is an interactive data explorer for single-cell datasets.
It is used for several Gray Foundation scRNA-seq datasets.
Minerva Viewer
Minerva is an image viewer with multiple layers and interactive zooming/panning.
Gray foundation datasets visualizable through this app:
- t-CyCIF